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- #PROPER INSTALL RJAVA WINDOWS INSTALL#
- #PROPER INSTALL RJAVA WINDOWS UPDATE#
- #PROPER INSTALL RJAVA WINDOWS MAC#
System/Library/Java/Support/Deploy.bundle/Contents/Home/lib/security/cacerts System/Library/Java/Support/CoreDeploy.bundle/Contents/Home/lib/security/cacerts Library/Java/JavaVirtualMachines/jdk1.8.0_60.jdk/Contents/Home/jre/lib/security/cacerts Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home/lib/security/cacerts Library/Internet Plug-Ins/ugin/Contents/Home/lib/security/cacerts In my case the 1.8.0_60 jdk version is located in /Library/Java/JavaVirtualMachines/jdk1.8.0_60.jdk/Contents/Home/jre/lib/security/ directory
#PROPER INSTALL RJAVA WINDOWS INSTALL#
So I ended up making a symlink to the openssl over there as mentioned about 467 cd /usr/bin/Ĥ71 sudo ln -s /usr/local/Cellar/openssl/1.0.2d_1/bin/opensslĪdding the CA cert for DAVID worked as the instructions belowĢ.3.3) Get DAVID’s certificate and install it into cacertsĮcho -n | openssl s_client -connect :443 | sed -ne ‘/-BEGIN CERTIFICATE-/,/-END CERTIFICATE-/p’ > ncifcrf.certīackup the cacerts file. Once openssl was installed I realized that it was installed in /usr/local/Cellar See below for the set of commands i used However when I did a it pull i got an error regrarding one of the files and I ended up deleting it. Luckily i think i had installed brew from github, so one of the solutions there worked for me However I ran into a ruby version error see this post.
#PROPER INSTALL RJAVA WINDOWS UPDATE#
Now i tried to do this using homebrew that is just trying to update using my brew installation. Sudo ln -s /usr/local/ssl/bin/openssl openssl Now you may need to reflect the change in your system if openssl version keeps pointing to the old version. If it is >= 1.0.2.d then go to step 2.3.3)Ģ.3.2) Update your openssl, i.e., download, compile and install itĭownload the official release from OpenSSL >= 1.0.2.d
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#PROPER INSTALL RJAVA WINDOWS MAC#
Specifically I downloaded the files from this particular sectionĪnd then proceeded to install the apple package.Ģ.3) In MAC (tested in Yosemite) the certificate will not work for the present stable openssl version 0.9.8.
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I found that I had to install Java and i went the got the Java 1.8 JDK from the Oracle Website. If the version is 1.7.XX or earlier then you need to install Java 8. The maximum size that Java accepts is 1024 bits.
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Previous versions will not run due to prime size. Work around for the new DAVID Web service configuration V 2.0ġ) First of all the HTTPS certificate needs Java 8 in order to run. One main thing is to register yourself for an account for using DAVID web service Briefly, all the steps were described in the post by Fresno and i will walk through those steps as i did myself. So I am putting up the steps i went through in case anyone runs into a similar situation. Of course i have to run GO enrichments for about 36 Gene Lists and needed and automated way to do this, which means I needed to figure out if I can install the package.Īfter some wrangling I got the package to run and while a lot of the steps were mentioned by the package maintainer Cristóbal Fresno here, I found that i had to get some issues resolved myself. I was recently trying to install the R/Bioconductor package RDAVIDWebService and I got the error that the URL has changed.
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